PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540502.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 162aa MW: 18434.1 Da PI: 9.3478

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540502.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.4e-16	17	103	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHe 88 +fY++YA+++GF+++ks+++ks r+ +C++egk+ ++ + +++r+++++++gCka +k++ ++ + + + +el+HnH+ KN540502.1_FGP001 17 NFYKTYAYHAGFDIKKSRTHKS-------IREVCCTREGKHVSKVAD-CDRERKKPSKKMGCKAYVKLRHNYdggvLSSVQYDVVELQHNHP 100 6***************9999.......6889******9999.899999*************953222234455677**** PP FAR1 89 lap 91 lap KN540502.1_FGP001 101 LAP 103 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-11	17	103	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MVPTKGMAFP TYDDPYNFYK TYAYHAGFDI KKSRTHKSIR EVCCTREGKH VSKVADCDRE 60 RKKPSKKMGC KAYVKLRHNY DGGVLSSVQY DVVELQHNHP LAPSPSAVKH MRAHKNHDDT 120 AMKIVDTMQE SHVPQSCIMG VLSDLHGGLD KIPFTTRDVE NR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540502.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005468	0.0	AP005468.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04.
GenBank	AP005773	0.0	AP005773.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0085C03.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882211.1	1e-113	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0P0WXC7	1e-111	A0A0P0WXC7_ORYSJ; Os06g0517100 protein
STRING	ORGLA03G0393200.1	2e-88	(Oryza glaberrima)
STRING	ORGLA10G0024000.1	1e-88	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-14	FAR1-related sequence 5