PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540554.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 116aa    MW: 13073.8 Da    PI: 8.5006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540554.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.23.5e-077088221
                AP2  2 gykGVrwdkkrgrWvAeIrd 21
                        y+G+r+++ +g+W+AeIr 
  KN540554.1_FGP002 70 LYRGIRRRP-WGKWAAEIRF 88
                       69*******.********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.55970116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MCGGAIISDF VPQREAHRAA TGSKRALCAS DFWPSASQEA ADFDHLTAPC TFTPDQAAEE  60
PTKKRERKTL YRGIRRRPWG KWAAEIRFHV IGVIYRIELS SDRLLSSSCK DECSKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16377KRERKTLYRGIRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540554.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2974471e-141AY297447.1 Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644689.12e-57ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0E0EG434e-56A0A0E0EG43_9ORYZ; Uncharacterized protein
STRINGOMERI07G23220.17e-57(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-17ethylene-responsive element binding protein