PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540594.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 173aa    MW: 18258.3 Da    PI: 6.7161
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540594.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like51.81.8e-1643742155
            G2-like 21 LGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       LGG   AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  KN540594.1_FGP001 43 LGG---ATPKSVLELMDVKDLTLAHVKSHLQMYRT 74
                       555...9***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-64075IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-124274IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-144575IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MHPRRFLQAK VRVPLTRVRG PPAAFTHPCK DAVPSDVARI FALGGATPKS VLELMDVKDL  60
TLAHVKSHLQ MYRTVKSTDK PAASSGPADG GSGDEEFAGG GGQAASGGGD SMDPWLSSNS  120
CNMDAHRSVG LSSPIENLEP CRSSSSQVSN HELSSPSLEF TLGRPDWHGA DHD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540594.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2687482e-98FJ268748.1 Oryza sativa Japonica Group rolled leaf 9 (RL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696540.11e-70PREDICTED: probable transcription factor RL9
SwissprotQ0J2352e-64ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A0D3H6I62e-74A0A0D3H6I6_9ORYZ; Uncharacterized protein
STRINGOBART09G09230.13e-75(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-19G2-like family protein