PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540599.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 366aa    MW: 40105.3 Da    PI: 8.1169
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540599.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.51.5e-332983155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  KN540599.1_FGP002 29 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0322686IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-322684IPR009057Homeodomain-like
SuperFamilySSF466891.49E-162986IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-242984IPR006447Myb domain, plants
PfamPF002491.3E-93182IPR001005SANT/Myb domain
PfamPF143791.6E-24128172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MERAGYGVGV GVGGAGAVGA GVVLSRDPKP RLRWTPDLHE RFVEAVTKLG GPDKATPKSV  60
LRLMGMKGLT LYHLKSHLQK YRLGKQNKKD TGLEASRGAF AAHGISFASA APPTIPSAEN  120
NNAGETPLAD ALRYQIEVQR KLHEQLEVQK KLQMRIEAQG KYLQTILEKA QNNLSYDATG  180
TANLEATRTQ LTDFNLALSG FMNNVSQVCE QNNGELAKAI SEDNLRTTNL GFQLYHGIQE  240
SDDVKCSQDE GLLLLDLNIK GGGYDHLSSN AMRGGESGLK ISQHRSIKES FVVSFWSKHT  300
TSDDQSNQRQ AFCHFTTGEV VVGYLEEDVS GHAQRLDGPV GDLVEQNLRL VVLLQVDRRV  360
RRLILG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-212985157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-212985157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-212985157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-212985157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540599.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0594480.0AK059448.1 Oryza sativa Japonica Group cDNA clone:001-028-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623757.10.0myb family transcription factor PHL11
TrEMBLQ6Z8D20.0Q6Z8D2_ORYSJ; Phosphate starvation response regulator-like
STRINGOGLUM02G29720.10.0(Oryza glumipatula)
STRINGORUFI02G30700.10.0(Oryza rufipogon)
STRINGOS02T0700300-010.0(Oryza sativa)
STRINGORGLA02G0249400.10.0(Oryza glaberrima)
STRINGOBART02G29100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.19e-64G2-like family protein