PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540608.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

M-type_MADS

Protein Properties

Length: 101aa MW: 11546.2 Da PI: 9.3587

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540608.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.1	1.8e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++ KN540608.1_FGP004 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.941	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.17E-38	2	61	No hit	No description
SuperFamily	SSF55455	3.4E-30	2	63	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLYEYATD 60 SWYVLTLGES FPLNSFDFLS SEGTYKGYNI TSEFCGHPYI Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-20	1	65	1	66	MEF2 CHIMERA
6byy_B	2e-20	1	65	1	66	MEF2 CHIMERA
6byy_C	2e-20	1	65	1	66	MEF2 CHIMERA
6byy_D	2e-20	1	65	1	66	MEF2 CHIMERA
6bz1_A	2e-20	1	65	1	66	MEF2 CHIMERA
6bz1_B	2e-20	1	65	1	66	MEF2 CHIMERA
6bz1_C	2e-20	1	65	1	66	MEF2 CHIMERA
6bz1_D	2e-20	1	65	1	66	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|Ref.9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540608.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC092556	1e-103	AC092556.8 Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence.
GenBank	AC135225	1e-103	AC135225.4 Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete sequence.
GenBank	AF377947	1e-103	AF377947.3 Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0032E21, complete sequence.
GenBank	AP014959	1e-103	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-103	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650602.1	5e-35	PREDICTED: MADS-box transcription factor 14
Refseq	XP_015631033.1	6e-35	MADS-box transcription factor 14 isoform X1
Refseq	XP_015631034.1	5e-35	MADS-box transcription factor 14 isoform X2
Swissprot	Q10CQ1	4e-36	MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBL	A0A3L6EH16	1e-36	A0A3L6EH16_MAIZE; MADS-box transcription factor 14
STRING	XP_004172815.1	1e-36	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-35	AGAMOUS-like 8

Publications ? help Back to Top
Jia H, et al. Characterization and transcriptional profiles of two rice MADS-box genes. Plant Sci., 2000. 155(2): p. 115-122 [PMID:10814814] Jang S,An K,Lee S,An G Characterization of tobacco MADS-box genes involved in floral initiation. Plant Cell Physiol., 2002. 43(2): p. 230-8 [PMID:11867703] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465] Li D, et al. Functional characterization of rice OsDof12. Planta, 2009. 229(6): p. 1159-69 [PMID:19198875] Tanaka N, et al. The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice. Plant Cell, 2011. 23(6): p. 2143-54 [PMID:21705640] Kobayashi K, et al. Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell, 2012. 24(5): p. 1848-59 [PMID:22570445] Wei X, et al. Fine mapping of BH1, a gene controlling lemma and palea development in rice. Plant Cell Rep., 2013. 32(9): p. 1455-63 [PMID:23689259] Su L,Shan JX,Gao JP,Lin HX OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice. Mol Plant, 2016. 9(2): p. 233-244 [PMID:26537047] Wu F, et al. The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses. Plant J., 2017. 89(2): p. 310-324 [PMID:27689766]