PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540621.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 916aa    MW: 101526 Da    PI: 8.4455
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540621.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.1e-32653707155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        ++rlrWt +LH++Fv+av+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYRl
  KN540621.1_FGP002 653 RQRLRWTDDLHDHFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRL 707
                        58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF527436.53E-596158IPR000209Peptidase S8/S53 domain
PROSITE profilePS5011526.392238352IPR001164Arf GTPase activating protein
SMARTSM001058.3E-45239360IPR001164Arf GTPase activating protein
SuperFamilySSF578639.68E-41240355No hitNo description
PfamPF014121.7E-37240354IPR001164Arf GTPase activating protein
PRINTSPR004053.2E-19250269IPR001164Arf GTPase activating protein
PRINTSPR004053.2E-19269286IPR001164Arf GTPase activating protein
PRINTSPR004053.2E-19290311IPR001164Arf GTPase activating protein
SuperFamilySSF495621.64E-27392486IPR000008C2 domain
CDDcd040383.24E-69394538No hitNo description
Gene3DG3DSA:2.60.40.1505.2E-28394485IPR000008C2 domain
PfamPF001686.2E-24395482IPR000008C2 domain
SMARTSM002396.6E-19396491IPR000008C2 domain
PROSITE profilePS5000416.154397476IPR000008C2 domain
PROSITE profilePS5129411.415650710IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-31652708IPR009057Homeodomain-like
SuperFamilySSF466896.99E-17652707IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-25654708IPR006447Myb domain, plants
PfamPF002494.5E-7655706IPR001005SANT/Myb domain
PfamPF143792.0E-11739775IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0005773Cellular Componentvacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0005096Molecular FunctionGTPase activator activity
GO:0005515Molecular Functionprotein binding
GO:0005543Molecular Functionphospholipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MSARSMSTCL ELLVVFVFIV APALAATKPS YIVYLGGRHS HGDDGGVILP EEAHRTAAES  60
HYDLLGSVLG EGRRMHTTRS WQFLGLERPD GSVPPWSPWE AARYGQNTII GNLDSGVWPE  120
SLSFNDRELG PIPNYWKGAC RNEHDKTFKC NSKLIGARYF NNGYAKLHQE YSNSYQISRS  180
LTGIETPSGD LSSSSPSAGA SVRLLISKLL GIFQALLRFA AGEKKKKKKR QCFHADKMRK  240
LKELLHKSEN RICADCSSPD PKWASANIGV FICVKCSGAH RSLGTHISKV LSVTLDEWTD  300
DEINSMLEVG GNSYANAIYE AFLPGGYHKP HPDSSQEERA DFIRSKYELQ EFLKPSLRIV  360
SNKSSLQAMD SRKDIGNASN SYSFKSEAGM VEFIGIIKVK VIRGTKLAVR DILSSDPYVV  420
LTLGQQKAKT KVIKSNLNPV WNEVLTLSVP QKYGPLKLQV YDHDVLSRDD IMGEAEVDLQ  480
PMITAAMAFG DPGLLSDMQI GRWLMSRDNA LARDSAVSVV GGRVKQEVSL RLQNVECGEK  540
RAPFGEMLVT FMFTSAIFER LEESLSYSLC SSLDFVCLGG PYSPQILLSI DGVQRSIALK  600
WQRGCQMYEP KPFSSIVLAH NNPVSHNQQI ERISNNVVSN RGGNSSNSNF ATRQRLRWTD  660
DLHDHFVDAV TQLGGPDRAT PKGILRIMGV QGLTIYHVKS HLQKYRLAKY IPDPTADGAK  720
SDKKDLGDLL ADIESSSGME IGEALKLQME VQRQLQLRIE AQGRYLQKII EEQQRLSGVL  780
GESGKLSALG PAPGEPYQDS NKTDPSTPVP TSESPIRDKA GSGLFKTISS HDDCREPLTP  840
DSSCRAGSPL ESPRASKRIR VSSGIDHHGN DEFPLLSKFR SQVQLILVQS ERCSVHITLQ  900
FMEVWKYSKD IGKYNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rj9_A9e-373935395149C2 domain-containing protein-like
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540621.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3248030.0HQ324803.1 Oryza sativa Japonica Group clone KCS268H02 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LDE80.0A0A0E0LDE8_ORYPU; Uncharacterized protein
STRINGOPUNC06G18860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-81G2-like family protein