PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540627.1_FGP006

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 142aa MW: 16003.2 Da PI: 4.3851

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540627.1_FGP006	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.2e-08	10	38	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT++Ed++lv+ v+++G ++W+ +a+ KN540627.1_FGP006 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAK 38 79***********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.015	5	38	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.62E-6	6	39	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-7	6	39	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-7	10	38	IPR001005	SANT/Myb domain
CDD	cd00167	1.57E-5	12	39	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MVTVREEMRK GPWTEQEDLQ LVCTVRLFGD RRWDFVAKVS DTVPIISMDG GDIHDDRSCM 60 ARVLKSTQSV MDGYTMDQIW KEIEAPGAPS LLGIDEGKDK ACSNLPCPLL TSTMSDYSCP 120 EVFWKIDNEE TRMLATQSGY GK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540627.1_FGP006

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134045	1e-173	AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBank	AK111626	1e-173	AK111626.1 Oryza sativa Japonica Group cDNA clone:J013113N19, full insert sequence.
GenBank	AP014967	1e-173	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	DQ075258	1e-173	DQ075258.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-1 mRNA, complete cds, alternatively spliced.
GenBank	DQ075259	1e-173	DQ075259.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-2 mRNA, complete cds, alternatively spliced.
GenBank	DQ075260	1e-173	DQ075260.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-3 mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617959.1	3e-69	myb-related protein MYBAS1 isoform X2
Swissprot	Q53NK6	2e-70	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	F4MGF7	6e-69	F4MGF7_ORYSJ; Myb family transcription factor, putative, expressed
STRING	ORUFI11G25190.1	1e-68	(Oryza rufipogon)
STRING	OS11T0700500-01	1e-68	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-15	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]