PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540669.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 102aa    MW: 11667.4 Da    PI: 9.1014
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540669.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26062.51.1e-1956102147
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 
                        +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll+
  KN540669.1_FGP001  56 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQ 102
                        6******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.02155102IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-1956102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MVYMVYKVER FGRIVSKSCK DLGDPAPAPK ISRTMQAPEE DDDDQQQQQQ HPAARRCAAC  60
RYLRRRCADD CVLAPFFPAS RPHRYACVHR VFGASNVARL LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-1553102857LOB family transfactor Ramosa2.1
5ly0_B7e-1553102857LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540669.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120711e-122AK112071.1 Oryza sativa Japonica Group cDNA clone:001-120-E04, full insert sequence.
GenBankAP0047081e-122AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12.
GenBankAP0047611e-122AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03.
GenBankAP0149641e-122AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-122CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CEK85e-36A0A0E0CEK8_9ORYZ; Uncharacterized protein
STRINGOS08T0517100-016e-34(Oryza sativa)
STRINGONIVA08G23410.13e-33(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-09LOB domain-containing protein 24