PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540675.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 187aa    MW: 20532.5 Da    PI: 8.8854
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540675.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-181972356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  KN540675.1_FGP003 19 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 72
                       4568999**********************************************9 PP
2HD-ZIP_I/II131.63e-4218108191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k+en++L +++++L++e+
  KN540675.1_FGP003  18 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLSHNKKLQAEI 108
                        69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-191176IPR009057Homeodomain-like
PROSITE profilePS5007117.2811474IPR001356Homeobox domain
SMARTSM003891.2E-171778IPR001356Homeobox domain
CDDcd000861.60E-161975No hitNo description
PfamPF000467.0E-161972IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-192182IPR009057Homeodomain-like
PRINTSPR000314.6E-64554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000314.6E-65470IPR000047Helix-turn-helix motif
PfamPF021837.9E-1274108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSILLLHLEA PTQGDAGEKK RRLNVEQVRT LEKNFELGNK LEPERKMQLA RALGLQPRQV  60
AIWFQNRRAR WKTKQLEKDY DALKRQLDAV KAENDALLSH NKKLQAEICV IVDACCVNLA  120
MINFPGGFPS SMIGTEIHVG FSVGRKVVGI GAFLTTTNSG AEGEGGGVGA DKPEQGDGGV  180
VQQPQRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540675.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735561e-141AC073556.11 Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete sequence.
GenBankAC1444911e-141AC144491.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAa0091P11, complete sequence.
GenBankAP0149591e-141AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-141CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629266.11e-57homeobox-leucine zipper protein HOX21
RefseqXP_015689780.11e-58PREDICTED: homeobox-leucine zipper protein HOX21-like
SwissprotQ8S7W91e-58HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A0E0CVU52e-56A0A0E0CVU5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NQB83e-56A0A0E0NQB8_ORYRU; Uncharacterized protein
TrEMBLA0A1D6JQ507e-58A0A1D6JQ50_MAIZE; Homeobox-transcription factor 102
TrEMBLF4MFH03e-56F4MFH0_ORYSJ; DNA-binding protein, putative, expressed
TrEMBLJ3LKG22e-57J3LKG2_ORYBR; Uncharacterized protein
STRINGOB03G15380.13e-58(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-54HD-ZIP family protein