PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540691.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 213aa    MW: 22566.3 Da    PI: 4.6626
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540691.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.4e-131657148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv ++++     W++Ia++++ gRt++++k+ w+++l
  KN540691.1_FGP004 16 KGSWTPEEDMRLVAYIQK-----WSKIASCLP-GRTDNEIKNVWNTHL 57
                       799*************85.....99*******.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-14562IPR009057Homeodomain-like
PROSITE profilePS5129417.1751161IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-191360IPR009057Homeodomain-like
SMARTSM007179.0E-91559IPR001005SANT/Myb domain
PfamPF002491.4E-101657IPR001005SANT/Myb domain
CDDcd001673.89E-121857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKWSKIASC LPGRTDNEIK NVWNTHLKKR  60
VSPEQKKGGG KSKRKTTCTD VLVPSPSPSS STTTTTNCSS GDSAGEQSNT SKEEDKIEIP  120
MLELDPCSFD FDMLVDPVVP DTYCPAVSAS ASASAPTSPC SSTSRGVDPL LDLPEIVDLG  180
PELWSIMDGG AGGGLGDIRL PNSTESSSDA TYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540691.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119600.0AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653723.17e-80PREDICTED: myb-related protein Zm1-like
TrEMBLA0A0E0KUL35e-88A0A0E0KUL3_ORYPU; Uncharacterized protein
STRINGOMERI04G18840.14e-92(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.13e-18myb domain protein 72