PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540698.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 226aa    MW: 24895.2 Da    PI: 5.8625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540698.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.8e-0655941255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  KN540698.1_FGP001 55 RREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 94
                       9*****************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.6044393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00195299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1255111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-75598No hitNo description
Gene3DG3DSA:4.10.280.106.5E-1356110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDANGGNGFG VESNASAVHG GMAMAWQWHG GQMSGGSSPA QQPAMDSLAW SSTLRREKIS  60
ERMKLLQDLV PGCSKVTGKA LMLDEIINYV QSLQRQVEFL SMKLSAVNPR IDLDIESLVN  120
NSKDVLRFPG QPSSAPMGFS FSQEMMPGLQ LSRPDILQGG VHGMINPDVF TSLMQKQQQN  180
DKGAFREPQM HQTLDGSFHN IAQMPYPHVM SSEELSIRQD QDGFHM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540698.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045572e-92AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149642e-92AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-92CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650276.11e-118transcription factor bHLH79
TrEMBLA0A0E0JCQ01e-117A0A0E0JCQ0_ORYNI; Uncharacterized protein
STRINGONIVA12G18400.11e-118(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-35bHLH family protein