PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540706.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 379aa    MW: 43364.5 Da    PI: 7.9168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540706.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-16461231598
                        -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +l++pk+f+++ +g+   + +++le+ + +s +v++  +k+++++++++GW +Fvk  +L+ gD+++F+++g+s+f   v +f+
  KN540706.1_FGP001  46 QLTIPKEFVQRLKGD--IPEEIQLETHNRNSHTVRV--DKSQEKVIFAAGWAQFVKTFDLRMGDSMMFRFKGNSQF--DVIIFD 123
                        79*******999888..5668***************..**********************************9999..777776 PP
2B337.15.7e-122953751499
                        T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + l++ k++++e+ gg+       +  ++ g +W ++l   +++g+ + + +GW++Fv++n+L + D+++++l +++++++ v+++++
  KN540706.1_FGP001 295 STLSVAKRYVDEYlGGE-----RFISLSPLGGKWGIRL--AGGGGSgTRMVGGWQKFVNENDLGVEDICLIELLKNHKGTMEVHIIKA 375
                        67999999999996544.....35667899********..555555588999**********************9*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-1922123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-1924124IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-534125IPR003340B3 DNA binding domain
PfamPF023623.0E-1346123IPR003340B3 DNA binding domain
CDDcd100176.16E-1646123No hitNo description
PROSITE profilePS5086311.16647125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-16274376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-15276376IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-13279374No hitNo description
SMARTSM010199.5E-7281376IPR003340B3 DNA binding domain
PROSITE profilePS5086310.123282376IPR003340B3 DNA binding domain
PfamPF023625.3E-10294375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGTRCERCRR RDEQDYRNLD DCQKHFLLLM MGDFQHEIRG EQIVEQLTIP KEFVQRLKGD  60
IPEEIQLETH NRNSHTVRVD KSQEKVIFAA GWAQFVKTFD LRMGDSMMFR FKGNSQFDVI  120
IFDQVGREKD DYLDPNVQEG RTNATETLNS SRAHSQPMPM QSPATETLNS SRAHPQPMRM  180
QLPTETVNHF HAPHYPMQMP IENMALSCTQ AMPTQMQSPP TYRWTQVQRD NLRYSLPSED  240
QGCRVGVIPD PIIGRRTKLN PVQEKVVNFK IQHIHSEIPI FVAVIKRSNV SGVLSTLSVA  300
KRYVDEYLGG ERFISLSPLG GKWGIRLAGG GGSGTRMVGG WQKFVNENDL GVEDICLIEL  360
LKNHKGTMEV HIIKAKDIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540706.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2234411e-134AC223441.1 Oryza glaberrima, complete sequence.
GenBankAC2370911e-134AC237091.1 Oryza glaberrima clone OG_BBa0009K13, complete sequence.
GenBankAP0046371e-134AP004637.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0703C03.
GenBankAP0054931e-134AP005493.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0078D03.
GenBankAP0149641e-134AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-134CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875809.10.0putative B3 domain-containing protein Os08g0325100
SwissprotQ6Z0D20.0Y8251_ORYSJ; Putative B3 domain-containing protein Os08g0325100
TrEMBLA0A0E0IA980.0A0A0E0IA98_ORYNI; Uncharacterized protein
STRINGONIVA08G11320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-16B3 family protein