PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540714.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 256aa    MW: 28251.5 Da    PI: 10.4662
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540714.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573514.1e-162584297
             DUF573 42 kksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97
                       ++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife+++ iW+
  KN540714.1_FGP003  2 RGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFEIARNIWR 58
                       678999************************8889**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-15257IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRGRLQLGFS KSQLVEKLRR LKRKYRNCVS RLRGSGSAFS FRSPHEQAIF EIARNIWRPT  60
NKHGRDGDSD DDDATPVTPA PIPVNTSPNG EVKSPTSGRQ RRRRRGGDFA AAAPATAPAT  120
TNMVQPIQPV QVPVSVPVKM DDTLPALSQT TMPITVTMEG SEPLRLPVMP PQPAVLDADK  180
SCLTPLFKEM VHAVINIGSN PFGAQLPEPP HGLPMEGEKW RKQRILELEV YLKRIELLQD  240
QVKATLEELK SSAPGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540714.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037490.0AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.11e-151probable transcription factor At5g28040
TrEMBLA0A0E0EEY01e-158A0A0E0EEY0_9ORYZ; Uncharacterized protein
STRINGOGLUM07G23550.11e-154(Oryza glumipatula)
STRINGONIVA07G23260.11e-154(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-18DNA-binding storekeeper protein-related transcriptional regulator