PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN540729.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 80aa MW: 8682.17 Da PI: 9.8582

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN540729.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.8	1.8e-14	2	62	1	56
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r++ KN540729.1_FGP002 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPE 62 6*******************9999888899***********************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.76	1	80	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-11	2	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PEPNWRSLLS AFVIRSIGIF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN540729.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135500	3e-98	AC135500.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence.
GenBank	AK288002	3e-98	AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
GenBank	AP014959	3e-98	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	3e-98	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006651596.1	4e-38	PREDICTED: LOB domain-containing protein 37-like
Refseq	XP_015628211.1	4e-38	LOB domain-containing protein 38
Refseq	XP_020177395.1	5e-38	LOB domain-containing protein 39-like
Swissprot	Q9FN11	4e-24	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A287N9M8	4e-37	A0A287N9M8_HORVV; Uncharacterized protein
TrEMBL	A0A287NA33	7e-37	A0A287NA33_HORVV; Uncharacterized protein
STRING	Pavir.Ia01299.1.p	4e-38	(Panicum virgatum)
STRING	OGLUM03G26640.1	2e-37	(Oryza glumipatula)
STRING	MLOC_51325.1	2e-37	(Hordeum vulgare)
STRING	OS03T0609500-01	2e-37	(Oryza sativa)
STRING	Traes_4AL_7241716B6.1	2e-37	(Triticum aestivum)
STRING	Traes_4DS_9575221BB.3	2e-37	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8450	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-26	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]