PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540735.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 156aa    MW: 17975.4 Da    PI: 9.4076
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540735.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.41.7e-161197191
               FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle.leHnHela 90
                       kfY++YA ++GF+++ks+++k         r+ +C++egk+ ++ ++  +++r+r+++++gCka +k++ ++   + + +v++++ l+HnH+l+
  KN540735.1_FGP001 11 KFYQTYACHAGFDIKKSRTHKA-------FREVCCTREGKHVSKVTD-GDRQRRRPSKKMGCKAYVKLRHNYdggKITSVVYDVVeLQHNHPLM 96
                       6****************99887.......7899**********9999.99999******************9642223345544349*****98 PP

               FAR1 91 p 91
                       p
  KN540735.1_FGP001 97 P 97
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-111197IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAFPTYDDAY KFYQTYACHA GFDIKKSRTH KAFREVCCTR EGKHVSKVTD GDRQRRRPSK  60
KMGCKAYVKL RHNYDGGKIT SVVYDVVELQ HNHPLMPSPS AVKHMRAHKN RDDTVMQFVD  120
TMQESHVPQS CIMGVLSDLH GGQENIPFTS RDIENR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156DRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540735.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882211.13e-90protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0P0XSM81e-109A0A0P0XSM8_ORYSJ; Os10g0156701 protein
TrEMBLQ8SB601e-105Q8SB60_ORYSJ; Uncharacterized protein
STRINGORGLA10G0024000.11e-103(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.13e-13FAR1-related sequence 11