PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540736.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 261aa    MW: 28566.4 Da    PI: 8.4513
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540736.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.45.5e-22164226163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  KN540736.1_FGP002 164 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYDELLSKN 226
                        89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.0E-18172IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.8E-1374138No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-17158223No hitNo description
PfamPF001701.6E-20164226IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-21164228IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415166229IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-11167223No hitNo description
CDDcd147024.79E-23169220No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGSSGADAPT KTSKASAPQE QQPPASSSTA TPAVYPDWAN FQGYPPIPPH GFFPSPVASS  60
PQGHPYMWGA QDSHHKESGQ EQDGEVRSSQ NGVSRSPSQA KLNQTMAIMP MPSSGPVPAP  120
TTNLNIGMDY WANTASSTPA IHGKATPTAA PGSMVPGEQW VQDERELKRQ RRKQSNRESA  180
RRSRLRKQAE CEELAQRAEV LKQENASLRD EVNRIRKEYD ELLSKNSSLK EKLEDKQHKT  240
DEAGVDNKLQ HSGDDSQKKG N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180186RRSRLRK
2180187RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.2}.
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540736.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.2). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.2). {ECO:0000269|Ref.2}.
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.2). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.2). {ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619718.11e-132bZIP transcription factor 68 isoform X2
SwissprotA0A3B6KF131e-112BZP1A_WHEAT; bZIP transcription factor 1-A
SwissprotA0A3B6MPP51e-112BZP1D_WHEAT; bZIP transcription factor 1-D
TrEMBLA0A0E0FAQ21e-132A0A0E0FAQ2_9ORYZ; Uncharacterized protein
STRINGOMERI12G04600.31e-133(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.17e-48basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]