PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540737.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 31335.1 Da    PI: 6.6308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540737.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.3e-062132521255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  KN540737.1_FGP001 213 RREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 252
                        9*****************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.611201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024212257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-12212269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-7213256No hitNo description
Gene3DG3DSA:4.10.280.102.9E-13214266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MANPFPIPPG LWNPPSHNMG LGETSFSSLL GMLSAGAPPP FAATPGFVDS AAGFPCYNGG  60
NLGAMINHPF PGTHQPLGDF QNGVEPCREI EDIEIEGSKN VSQTGEKQQG DGETTHAVDS  120
LSKELSMPGR NGGAGHDEGT RVSCSKKRKR SGQDGGVKHA EGGEQLATVG SAQKNEDDEK  180
GEPKRSSVVS GKSSGKQIKD NAGSPKEDYI HVRREKISER MKYLQDLVPG CSKVTGKAVM  240
LDEIINYVQS LQRQVEFLSM KLASVNPTLD FNIERILSKD VRYFSPGLYR F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540737.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
GenBankHQ8588720.0HQ858872.1 Oryza sativa Japonica Group isolate UT1748 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643530.10.0transcription factor bHLH49 isoform X1
RefseqXP_015643532.10.0transcription factor bHLH49 isoform X1
RefseqXP_015643533.10.0transcription factor bHLH49 isoform X2
RefseqXP_015643534.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0E0A8350.0A0A0E0A835_9ORYZ; Uncharacterized protein
STRINGOGLUM06G11560.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.38e-44bHLH family protein