PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540745.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 108aa    MW: 12147 Da    PI: 10.8456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540745.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-093765435
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskaps 35
                       ahn  E+rRR +i ++f +L++l+P +   ++
  KN540745.1_FGP001 37 AHNLTEKRRRFKITERFRTLQRLVPGC---DN 65
                       8************************96...33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6523389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-83566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-93767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-53766No hitNo description
PfamPF000101.0E-63765IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MNKDEASDGS SERKKKKKAS SAAGKASCCR HRHAAGAHNL TEKRRRFKIT ERFRTLQRLV  60
PGCDNKGCHN KHACKSESEE RKIKSAKSCF KPGIYFVVKI EVTSIGRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117ERKKKKK
24146EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540745.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7325354e-58AL732535.4 Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149684e-58AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126204e-58CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.13e-24transcription factor APG
TrEMBLA0A0E0BUV13e-24A0A0E0BUV1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MPB97e-24A0A0E0MPB9_ORYPU; Uncharacterized protein
STRINGOGLUM12G19510.15e-25(Oryza glumipatula)
STRINGOPUNC12G16280.11e-24(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-08bHLH family protein