PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540819.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 153aa    MW: 17057.3 Da    PI: 9.3777
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540819.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.11.5e-21143446
            G2-like  4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46
                       +rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+
  KN540819.1_FGP001  1 MRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHM 43
                       79**************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-17143IPR009057Homeodomain-like
SuperFamilySSF466891.7E-7142IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-14142IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MRWTTALHAH FVHAVELLGG HERATPKSVL ELMNVKDLTL AHMYRTVKGT DRSCVAGHGQ  60
ASREMGFLMR RGLVAEVDSF DGFNNNNNNM VNTTSNNTTS RGVAQLLVES CIQQLEQDKG  120
NFIGLDQRRK RLPLSLNSGK HGQATWQQLA QLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540819.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126202e-82CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618990.11e-60uncharacterized protein LOC4352677
TrEMBLA0A0E0MP637e-67A0A0E0MP63_ORYPU; Uncharacterized protein
STRINGOPUNC12G15840.11e-67(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.25e-28G2-like family protein