PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540822.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 144aa    MW: 16552.2 Da    PI: 10.4134
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540822.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.5e-1065982255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
                        +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  KN540822.1_FGP001 65 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 98
                       58*****************************985 PP
2ELK37.35.7e-131839122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK +Ll+KYsgyL+sL+ E+s
  KN540822.1_FGP001 18 ELKSHLLNKYSGYLSSLWRELS 39
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037896.4E-101839IPR005539ELK domain
PROSITE profilePS5121310.3531838IPR005539ELK domain
SMARTSM011884.0E-71839IPR005539ELK domain
PROSITE profilePS5007112.45538101IPR001356Homeobox domain
SuperFamilySSF466896.84E-1939106IPR009057Homeodomain-like
SMARTSM003899.5E-1240105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-2643102IPR009057Homeodomain-like
CDDcd000863.41E-1147101No hitNo description
PfamPF059201.9E-165897IPR008422Homeobox KN domain
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAAAGLPEIT SPCAEDKELK SHLLNKYSGY LSSLWRELSK KKKKGKLPRD ARQKLLHWWQ  60
LHYRWPYPSE LEKAALAEST GLDAKQINNW FINQRKRHWK PTPPAKEYRV SANIGYVLQR  120
KTAIVVGCQC NSAKSLTFIA DMAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540822.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288861e-123AB028886.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH10, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628832.13e-74homeobox protein knotted-1-like 4
SwissprotQ75LX73e-75KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A0E0D4E33e-73A0A0E0D4E3_9ORYZ; Uncharacterized protein
STRINGOMERI03G24720.15e-74(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.16e-44KNOTTED-like from Arabidopsis thaliana