PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540864.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 211aa    MW: 23698.9 Da    PI: 5.9324
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540864.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.6e-082281947
                       TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47
                       +G + Wk+I +++g ++t  q++s+ qky
  KN540864.1_FGP002  2 YGRD-WKKIEEHVG-TKTTIQIRSHAQKY 28
                       7766.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.812133IPR017930Myb domain
PfamPF002495.8E-6228IPR001005SANT/Myb domain
SuperFamilySSF466896.58E-8234IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-8231IPR006447Myb domain, plants
CDDcd001670.00124229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MYGRDWKKIE EHVGTKTTIQ IRSHAQKYFL KVQKMGLAAG LPPQYPRRRL VMQQQQQSSP  60
ANLEWTSTSG TAAWGNHHGL IGPAAAFDSF PGESSFMGAE SFSNMSMDWT GTTSEMATAS  120
IVQDEMIELP LSPDDLQFAQ VYRFIGDIFD PDSPCPVETH LQKLKSMDDI IVKTILLVLR  180
NLEDNLLSPQ FEPIRRLLST YDPNRGLSGH L
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540864.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069690.0AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646001.11e-133protein REVEILLE 8
TrEMBLA0A0E0FGG71e-137A0A0E0FGG7_ORYNI; Uncharacterized protein
STRINGONIVA01G04110.11e-138(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.16e-34MYB_related family protein