PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540890.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 166aa    MW: 18786 Da    PI: 6.7753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540890.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.51.3e-1863107243
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae 43 
                         Dg+ WrKYG K++k+s fpr YYrC+++   +C+++k v+++++
  KN540890.1_FGP002  63 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQEND 107
                        7***************************99999*******99873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.89E-1858108IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-1761110IPR003657WRKY domain
SMARTSM007741.0E-2262115IPR003657WRKY domain
PROSITE profilePS5081114.10263106IPR003657WRKY domain
PfamPF031064.7E-1964114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASRHQLQTM QFADPASRSP RPVGGGVHGQ PLPTPLSSPF SSRKPRMQEG HPTCVNLTPI  60
PHTDGHLWRK YGEKKIKNSS FPRLYYRCSY RDDRNCMATK VVQQENDADP PLYRMRSSAP  120
PTPSSSTVVD DGWDTFSSFD LDTCEFSVDD ELLCGDHMYF PDSMQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540890.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997742e-76AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149662e-76AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-76CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.29e-77probable WRKY transcription factor 32
TrEMBLQ6IER36e-76Q6IER3_ORYSJ; WRKY transcription factor 18
STRINGORGLA10G0049300.16e-76(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.12e-15WRKY DNA-binding protein 66