PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540892.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 437aa    MW: 45895.3 Da    PI: 7.5731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540892.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053293661254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +++eYIk L
  KN540892.1_FGP002 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366
                        677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11327380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-5327370No hitNo description
Gene3DG3DSA:4.10.280.104.1E-8327375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGDHQMMHAA PAAMYNGGGG TTSSHGVWWS NAVGVPAAAT CSTTTELAGY TAWSSALAAG  60
YDGMVADNGG KQQAKSTPTA SSESPGNNSS VTFQEPASIP DPAAVAAVPQ PGLAGFTDWT  120
QPFMNNGAGL HEFLQDGHHD MSASSLMNHS SNNLALQQAG HHHELLSSFG SDLLLSPTSP  180
YGGFQSSLLR SLMEPTAKQQ QQQQPALAGL QQYHQYQQQM GHTPAAAAKF AQAVGARDSL  240
QFTNDAPFWN PSAGFGMPAA AAAAAAQDQA SVRSAKRSSP APPRAAATLA LKTAMEGVGD  300
SSSVITKKET AFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI  360
EYIKFLHDQV GALSAPYLKN GAHQVPHLKN SSPDKSKHGE ISLKGRGLCL VPISSTFAVA  420
SEVPVELWTP FGANFIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540892.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693660.0AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLA0A0E0GKH20.0A0A0E0GKH2_ORYNI; Uncharacterized protein
STRINGONIVA03G13290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-48bHLH family protein