PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541013.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27173.5 Da    PI: 6.3068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541013.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.4e-151647839
                       HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
             SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevavii 39
                       +r  tf++R+++++K A+ELSvLCda+vav++
  KN541013.1_FGP002 16 KRAATFARRKETVMKMAKELSVLCDAQVAVVV 47
                       6899**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-10160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-17176IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.671161IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-7323IPR002100Transcription factor, MADS-box
CDDcd002661.13E-24382No hitNo description
PfamPF003195.0E-131452IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPRAKTPMGL IPFPKKRAAT FARRKETVMK MAKELSVLCD AQVAVVVGDP GGGAAEKAAW  60
ESEEGVLDRY RALPPEVRAK RSLTHREYLR GELRKQRAKL AKVREEGAFK PWDDALDGIA  120
EEETRKLHKY LSDKIEAARA RMEAMGLQLG DVDDNGVNGD DGSGLDLQQH VPPSASDAKE  180
FDTAGADFIN ALNNFLTTGV SDYSAQSSGY GIGNQIDNAK QLLYQMQMQY PVGGTGGADP  240
SDTQSKNRGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541013.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3ENE01e-141A0A0D3ENE0_9ORYZ; Uncharacterized protein
STRINGOBART01G14250.11e-142(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.16e-09AGAMOUS-like 92