PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541083.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 130aa    MW: 13331.8 Da    PI: 9.8562
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541083.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.2e-093402457
                       S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  KN541083.1_FGP002  3 NPPRDEIPRIRMQLqeygQVGDANVFYWFQNRKSRSKN 40
                       7999999**********9*****************995 PP
2Wus_type_Homeobox69.17.7e-231412464
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k
  KN541083.1_FGP002  1 MVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 41
                       79*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.32E-6342IPR009057Homeodomain-like
PfamPF000461.2E-6339IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVNPPRDEIP RIRMQLQEYG QVGDANVFYW FQNRKSRSKN KLRSGGTGRA GLGLGGGGDD  60
GAPGGRAVHV DVTSSAAGVL PPVPSSPSPP DAAVTVASVA ATASLTDFAA SAISAGAVAN  120
NQFQDRLFHA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541083.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642365e-86AK064236.1 Oryza sativa Japonica Group cDNA clone:002-104-H12, full insert sequence.
GenBankAP0037605e-86AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBankAP0067535e-86AP006753.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04.
GenBankAP0149575e-86AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAP0149635e-86AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126095e-86CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646013.11e-34WUSCHEL-related homeobox 13
SwissprotA3BKM25e-35WOX13_ORYSJ; WUSCHEL-related homeobox 13
TrEMBLA0A0E0N0F94e-31A0A0E0N0F9_ORYRU; Uncharacterized protein
STRINGORUFI01G28730.17e-32(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.16e-22homeobox-3