PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541138.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 183aa    MW: 20260.1 Da    PI: 8.0925
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541138.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like301.1e-091203655
            G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                       m+vkgLtl h+kSHLQkYRl
  KN541138.1_FGP001  1 MGVKGLTLFHLKSHLQKYRL 20
                       99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-8121IPR009057Homeodomain-like
PfamPF143796.9E-2261106IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGVKGLTLFH LKSHLQKYRL GKQSGKEASE QSKDASYLLD AQGGMSVSPR VSTQDVKENQ  60
EVKEALRAQM EMQRRLHEQV EVQKHVQIRM EAYQKYIDTL LEKACKIVSE QLASSGFSIS  120
DNDLLELSGG VMCGSADTLS SSIFHQLSVS PINLHSPEGK PTPSGIEGQM ILQKSPELKR  180
KSC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541138.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693360.0AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611986.11e-129protein PHR1-LIKE 2
SwissprotQ94A576e-39PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA2YZK61e-129A2YZK6_ORYSI; Uncharacterized protein
TrEMBLI1QMR91e-129I1QMR9_ORYGL; Uncharacterized protein
STRINGORGLA09G0034800.11e-130(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-41G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]