PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541160.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 531aa    MW: 60072.8 Da    PI: 6.5055
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541160.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1591.5e-1840124191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fY++YA ++GF v+++ks+ + + g + +  +vC+k+g  +e+        + r++ +t+C+a+++ ++++dg  ++++++leHnH+l+p
  KN541160.1_FGP002  40 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGDGKEDACY-----QARPTAKTNCQATVVARLWSDGLLHLMDVNLEHNHALNP 124
                        6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1640124IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.409256292IPR007527Zinc finger, SWIM-type
SMARTSM005750.002267294IPR006564Zinc finger, PMZ-type
PfamPF044347.6E-4269289IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MVDAAAAECV ELDGTDAMAY GDDRTPRDGM VFKSYEEVLN FYKRYALRTG FGVCVKKSSF  60
TKAGLCRRLV LVCNKWGDGK EDACYQARPT AKTNCQATVV ARLWSDGLLH LMDVNLEHNH  120
ALNPSAARFL RCYKTLPSGM SKDLVVRAAR GECSTSGDIE VPIFDDWGRL KIGEDDNKYK  180
MEEDDDLESL SRSRVLVSKF PMEEQLSRLY TFKMFTKLQN ELNATMNCEV QLDDSTSSIV  240
VIDLAESSGE MVNKKYEVVH YMETDRMECN CGLFQFSGIV CRHTLSVLKC QHVFDIPPCY  300
VLNRWRNDFK QLHALDNPWK DLVTSNHIER YDYVSLQCLR LVEIGASSDE KHQHALKLIR  360
DIRRTLLDDN LCRELEQKLT PSERAINGDS HMQAGSSEGG PAKKRRGRPP KKSKDTNVES  420
VSNQYAHKDS LLVSSDVSQK DAFHSSSTAS NLGTHVRTNG VVDLMEEVNP NELSFDSRYG  480
VQSSHPHHYG NQLHPSNNMQ LDTPKLNGND TSQFTFTLLG TQPLMYKIEM L
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541160.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703640.0AK070364.1 Oryza sativa Japonica Group cDNA clone:J023050I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629688.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_015629689.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_015629690.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA2XNY40.0A2XNY4_ORYSI; Uncharacterized protein
TrEMBLA3APM90.0A3APM9_ORYSJ; Uncharacterized protein
TrEMBLQ75LD40.0Q75LD4_ORYSJ; Os03g0843700 protein
STRINGOS03T0843700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-20FAR1-related sequence 3