PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541231.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 240aa    MW: 27071.8 Da    PI: 9.7259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541231.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.5e-50101531128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                        lppGfrF P+deelv++yL++kv +++           ++ evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkat
  KN541231.1_FGP001  10 LPPGFRFYPSDEELVCHYLHNKVVNQHrfagvgAAGGGTMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKAT 101
                        79********************99999766654333347***************87788999****************************** PP

                NAM  87 gkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        gkd+ +++           + + vg++ktLvfy+grap+g+kt+Wvmhe+r+
  KN541231.1_FGP001 102 GKDRVIHNPklhaaaaahrRASIVGMRKTLVFYRGRAPNGVKTNWVMHEFRM 153
                        *******9877776666555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-597172IPR003441NAC domain
PROSITE profilePS5100555.6610172IPR003441NAC domain
PfamPF023655.3E-2811153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNQHRFAG VGAAGGGTMV EVDLHTHEPW  60
ELPDVAKLST NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIHNP KLHAAAAAHR  120
RASIVGMRKT LVFYRGRAPN GVKTNWVMHE FRMENPHTPP KEDWVLCRVF YKKKAETETE  180
SSYSMENEQE AVIAMARSAA AIKAGYSGTS YSAVALFGVC ISVDASKTSL TDPQKLTAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-4711787173NAC domain-containing protein 19
3swm_B2e-4711787173NAC domain-containing protein 19
3swm_C2e-4711787173NAC domain-containing protein 19
3swm_D2e-4711787173NAC domain-containing protein 19
3swp_A2e-4711787173NAC domain-containing protein 19
3swp_B2e-4711787173NAC domain-containing protein 19
3swp_C2e-4711787173NAC domain-containing protein 19
3swp_D2e-4711787173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541231.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0609760.0AK060976.1 Oryza sativa Japonica Group cDNA clone:006-202-E09, full insert sequence.
GenBankAK0709820.0AK070982.1 Oryza sativa Japonica Group cDNA clone:J023075A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623778.11e-139protein CUP-SHAPED COTYLEDON 1
SwissprotQ84TE63e-61NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0NML91e-138A0A0E0NML9_ORYRU; Uncharacterized protein
TrEMBLB8AEI01e-138B8AEI0_ORYSI; Uncharacterized protein
TrEMBLQ6K5X21e-138Q6K5X2_ORYSJ; Os02g0810900 protein
STRINGORUFI02G38340.11e-139(Oryza rufipogon)
STRINGOS02T0810900-011e-139(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-78NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]