PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN541242.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 62aa MW: 6809.65 Da PI: 9.0796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN541242.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.6e-05	20	41	6	27
HHHHHHHHHHHHHHHHHHHCTS CS HLH 6 nerErrRRdriNsafeeLrell 27 + Er RR+++N+ ++ L +l+ KN541242.1_FGP002 20 KTTERLRREEMNKLYSHLDSLI 41 578***************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MEIPPPSAGG GGGGGKPDRK TTERLRREEM NKLYSHLDSL IGDGYGGIER VVQRLKEEIR 60 SN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN541242.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005756	2e-55	AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBank	AP014958	2e-55	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3F2S5	5e-13	A0A0D3F2S5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0P0VGQ8	5e-13	A0A0P0VGQ8_ORYSJ; Os02g0230500 protein
STRING	OMERI02G10840.1	1e-14	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11987	29	38