PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541302.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1276aa    MW: 143605 Da    PI: 8.1321
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541302.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.81.4e-161015112218127
                NAM   18 yLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel..vglkk 104 
                          L++k++ ++++     i+ v+  +v+P +L +  +++ k w +F ++++ +      +r+t sgyWk  g++  +++  ++l  vg+k 
  KN541302.1_FGP001 1015 LLRNKLHCNQHDGVARlIPVVGADYVDPPQLAAIGAGDGKPWLYFRQHEELT-----GSRSTPSGYWKGAGTTSVIYDLADRLlpVGVKS 1099
                         68899988886664444**************855556778999999887754.....578999*************998444455***** PP

                NAM  105 tLvfykgrapkgektdWvmheyr 127 
                         ++ fy+gr+p+g+kt+W m+e+ 
  KN541302.1_FGP001 1100 SMLFYHGREPSGHKTKWKMDEFW 1122
                         *********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147981.54E-93134No hitNo description
SuperFamilySSF525402.32E-40180444IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009315.7E-40190470IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3004.8E-6201216IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.3E-7208223No hitNo description
Gene3DG3DSA:3.40.50.3008.0E-5217295IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.3E-7379393No hitNo description
SuperFamilySSF520583.06E-21509913IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.8E-16584750IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.8E-16793912IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5100519.7049981161IPR003441NAC domain
SuperFamilySSF1019416.93E-1710151130IPR003441NAC domain
PfamPF023652.0E-610271121IPR003441NAC domain
Gene3DG3DSA:3.40.50.3004.8E-611231192IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1276 aa     Download sequence    Send to blast
MLSLPGRLED LVRRHGSKLP KGAEEEIPLI KQDLEKIISI LHGHREPKLE GHAMVVRCWM  60
KEVRELSYDI EDCIDQYEHA AGSRGDSGKG SNNVSRRKLF SRRRWSKPPW VPEKLKQRLW  120
MANKIREFSL RAQEALRCHA MFNSLGGITS TTASTTTRAC SDPCDASAAS SSSSWRHAPS  180
GEHGHVGIDA AMNKLEDWLT DGQKQLKVVS IVGVGGVGKT TLATELYRKL GQQFECRAFV  240
RSSHKPDMRM LLISMLSQVH PQAQQPPDIW KKSNSLMRQM RSIRDQFAIK HPIIPHEPNS  300
PDTCSTSQQD GNSRSRIVTT IEIEDQALQT SCYDNKYVFN MKSLGEDDSR KLFFSTIFGP  360
HPICPPELCE VSYDIIRKCG GLPLAIITTA SLLAKLTERE QWNYVNKSLG CSLMTDSTME  420
GMKQVLNLSY SHLPRHLKAC LLYLSIYQED YIIWKSDLVN QWMAEGFICA TEDYSTEEIL  480
KSCFDELVSR KMIQPIHIDD DGEVISFMVH HMVLNFITYK SIEENFASTI HNSHMTTELA  540
DKVRRLSLHF GNAEDAMTPT NMRLTQVRTL AFFGVYNCMP FIVEFRLLQV LILHIWGDAD  600
IMSFDLTRIS QLLRLRYLNI RSNLTLDLET QIRGLQHLKT LEIDARVSTV PLDISHLSSL  660
VHLRLPADTI LAYGIGNITS LRTLGYFDLS RNTVEIVRSL GNLTNLQNLR VTYSAIQLNN  720
RGNKLRLKRK LRFLGLILHE LKNLKSITLL PAVSCANFLG DDVSATSTRI SCVGLSTLYT  780
PPEFLERVEL LSHICVFSSL PKWIGELSKL CILKIGIRKL VRNDIDVLRD LPTLVALSLY  840
IDTKPAERIV FDEPGFSALK YFNFNCSVAC LKFKMGAMPN LQKLKLGYNV HEADQEHVIP  900
IGIENLSGLK EVSVEVGYVD PEKYDRRAEE LAFKLGAIGL YVSRPRVTLQ CVRQKFGCKE  960
DKRKSNMTRE EEHGKLKQPE IPDDSDTSEH DEMFDDIWGQ EAKQSTLSEW NILLLLRNKL  1020
HCNQHDGVAR LIPVVGADYV DPPQLAAIGA GDGKPWLYFR QHEELTGSRS TPSGYWKGAG  1080
TTSVIYDLAD RLLPVGVKSS MLFYHGREPS GHKTKWKMDE FWSLGNDAAV VAMDGSSFAA  1140
TVQPQIVQPR KALSLCRLYS TKSSMAGPGP SGAPGSAGVF QIDRLLQSLL GGDIFLPDQA  1200
QQYVNSSQQS GQFREMTMVT TNPDADGFSW TMYDQKITKG ARQSISTTIG KRSKGEVRGD  1260
VERGGGTVAV RHCVYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-285580457758Disease resistance RPP13-like protein 4
6j5t_F2e-285580457758Disease resistance RPP13-like protein 4
6j5t_G2e-285580457758Disease resistance RPP13-like protein 4
6j5t_L2e-285580457758Disease resistance RPP13-like protein 4
6j5t_O2e-285580457758Disease resistance RPP13-like protein 4
6j5u_A2e-285580457758Disease resistance RPP13-like protein 4
6j5v_A2e-285580457758Disease resistance RPP13-like protein 4
6j5w_A2e-285580457758Disease resistance RPP13-like protein 4
6j6i_C2e-285580457758Disease resistance RPP13-like protein 4
6j6i_F2e-285580457758Disease resistance RPP13-like protein 4
6j6i_G2e-285580457758Disease resistance RPP13-like protein 4
6j6i_L2e-285580457758Disease resistance RPP13-like protein 4
6j6i_O2e-285580457758Disease resistance RPP13-like protein 4
6s2p_N1e-291825167339NRC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1725731RLKRKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541302.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356449e-96AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence.
GenBankAP0149679e-96AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615335.10.0disease resistance protein RGA5-like isoform X1
RefseqXP_015615336.10.0disease resistance protein RGA5-like isoform X1
TrEMBLA0A0D3HQ120.0A0A0D3HQ12_9ORYZ; Uncharacterized protein
STRINGOBART11G23060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-23NAC domain containing protein 90