PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541538.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 241aa    MW: 26295.9 Da    PI: 5.0237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541538.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.6e-10117157549
                AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaa 49 
                        GV+++   grW++  rd       + r +lg+f ++eeA++a++a+
  KN541538.1_FGP002 117 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAF 157
                        9**998.9******888....23459******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.891114180IPR001471AP2/ERF domain
PfamPF008472.2E-6117157IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-9117159IPR016177DNA-binding domain
SMARTSM003803.9E-4117180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-11117156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVAFRRIRIS YSDPDATDSD SDSDSADAGD HDISSRSSRT NAAARRKVIV ISLSRKKGRS  60
LSQSGRHYRR RRSEIPAAAA KAVEAEDWPS LSDGMRRGAV AAARSASAAA KKGSRGGVYQ  120
RQPGRWAVDF RDSQLKVRQW LGTFPSEEEA RAAYDAFEVQ EAPPPSSSAS AATPPPLNPP  180
PFVVDTFLGE DDHLAADEDD RFGFGLADLG HLPLPFLDDN DMDFKLSDSD DLSFLFDIGF  240
M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15471RKKGRSLSQSGRHYRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541538.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056280.0AP005628.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1014_E02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875765.14e-70ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0QI114e-92A0A0E0QI11_ORYRU; Uncharacterized protein
STRINGORUFI08G13790.16e-93(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-07related to AP2 11