PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541552.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 240aa    MW: 27891.2 Da    PI: 10.9583
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541552.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP50.53.5e-16681193071
            E2F_TDP  30 vakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        va+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  KN541552.1_FGP001  68 VADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 119
                        5666666677789999999************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.9E-104119IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-2262124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.02E-1167120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.1E-1267119IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.13E-26124226IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.07E-31126229No hitNo description
SMARTSM011381.3E-24126236IPR014889Transcription factor DP, C-terminal
PfamPF087815.3E-23127227IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRQRGRRAVR TGTGRRRRPG RRGSPGGGSF LRKLRPKEEP HIMRYSRTHI MVQTSNDEVY  60
TSSGELIVAD EIFAELKSIT QNGLEFDEKN IRRRVYDAFN VLIAIRVIAK DKKEIKWMGL  120
TNYRYEKIQK LEEVHKELIT RIKNKKKLLQ EIEKQFDDLQ NITLRNQASQ RPAESVNGIL  180
LPFLLIKTSR KARVEIEISE DSKFARFDFN GAPFTMHDDV SILEAIRRNN KGRAGLSILP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541552.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631692.11e-116transcription factor-like protein DPB isoform X2
TrEMBLA2WTS21e-131A2WTS2_ORYSI; Uncharacterized protein
STRINGORGLA01G0217000.11e-118(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.24e-40Transcription factor DP