PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541585.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 121aa    MW: 13572.3 Da    PI: 10.1106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541585.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-101444131
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                       +g+WT+eEd+llvd+++  G g+W++ ++  
  KN541585.1_FGP001 14 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLA 44
                       79***********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-12543IPR009057Homeodomain-like
SuperFamilySSF466891.94E-8943IPR009057Homeodomain-like
PROSITE profilePS512949.821969IPR017930Myb domain
SMARTSM007170.00891385IPR001005SANT/Myb domain
PfamPF002496.4E-81444IPR001005SANT/Myb domain
CDDcd001679.95E-51642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPE EDKLLVDYIQ ANGHGSWRLL PKLAEKGVNA PDSRWGQTDE  60
KKNLLPRSDK RPNQSSERFA TTPAAQEQPV ACGGFIARKE QKWAGQARRP YANDSLSGRY  120
Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541585.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041331e-121AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03.
GenBankAP0149581e-121AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-121CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6H7R94e-43Q6H7R9_ORYSJ; Uncharacterized protein OJ1112_G03.10
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-21myb domain protein 17