PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541602.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 309aa    MW: 33799.2 Da    PI: 5.6328
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541602.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.82.1e-17154205458
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                        +kr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k   +l++  ++
  KN541602.1_FGP002 154 VKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFK---QLTDANQQ 205
                        79**************************************9995...55555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.9E-18151215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174153205IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-13154206No hitNo description
PfamPF001705.5E-15154203IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-14155206No hitNo description
CDDcd147021.11E-23156206No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
VLCLNIFFYI FLNIHELLIK CISEDMGFSI ARPIATYLIY RCLIHWKSFE EDRTTVFDCI  60
IQKISAAIES TITGGIPNHI WPQSQNLNAR HPAVSTTIES QSSICAAASP TSATNLNMKE  120
SQILGGTSGS DSESESLLDI EGGPCEQSTN PLDVKRVRRM VSNRESARRS RKRKQAHLAD  180
LESQVDQLRG ENASLFKQLT DANQQFTTSV TDNRILKSDV EAPWVKVKMA EDMVARGALS  240
CGLGHLGGLS PALNPRQACR VPDVLAGLDY AGDDPFTAGL SPPEQLQMPG GEVVDAWGWD  300
NHPNGGMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173RRSRKRK
2167174RRSRKRKQ
3169174SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541602.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534730.0AB053473.1 Oryza sativa mRNA for RISBZ4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623252.11e-172bZIP transcription factor RISBZ4-like isoform X1
SwissprotQ6H5001e-173RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0D3F1E51e-172A0A0D3F1E5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G2501e-172A0A0E0G250_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NAK61e-172A0A0E0NAK6_ORYRU; Uncharacterized protein
STRINGORUFI02G05790.11e-172(Oryza rufipogon)
STRINGONIVA02G06040.11e-172(Oryza nivara)
STRINGOBART02G05680.11e-172(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.18e-35basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]