PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541603.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 176aa    MW: 18054.9 Da    PI: 4.9441
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541603.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.4e-4033132199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+++C++apyf +e  +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l+
  KN541603.1_FGP002  33 PCGACKFLRRKCVQGCIFAPYFDSEAgAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQ 124
                        7*********************998879**************************************************************** PP

             DUF260  92 aelallke 99 
                        +el++l+ 
  KN541603.1_FGP002 125 SELNYLQG 132
                        ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6432134IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-4033131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSSVVVSAS GSGSGGSGGG GGGGAGGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA  60
AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA RLRDPVYGCV AHIFHLQHQV  120
AGLQSELNYL QGEKSNDDDD GEEDDGDVGD GDGCKGCPLA PFYNAWEFAP KEEAWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-39291337110LOB family transfactor Ramosa2.1
5ly0_B2e-39291337110LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541603.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2002360.0AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613830.19e-69LOB domain-containing protein 30
SwissprotO813225e-55LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0E0B8652e-67A0A0E0B865_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IPW82e-67A0A0E0IPW8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QWJ12e-67A0A0E0QWJ1_ORYRU; Uncharacterized protein
TrEMBLA2Z5A42e-67A2Z5A4_ORYSI; Uncharacterized protein
TrEMBLI1QSR92e-67I1QSR9_ORYGL; Uncharacterized protein
TrEMBLQ7XGL42e-67Q7XGL4_ORYSJ; LOB domain protein
STRINGOGLUM10G03230.13e-68(Oryza glumipatula)
STRINGORUFI10G03180.13e-68(Oryza rufipogon)
STRINGOS10T0162600-003e-68(Oryza sativa)
STRINGONIVA10G03250.13e-68(Oryza nivara)
STRINGORGLA10G0025200.13e-68(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.14e-54LOB domain-containing protein 31