PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541665.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 499aa    MW: 54760.7 Da    PI: 8.6511
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541665.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.2e-095378126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ++++ C ++ ++G C++G +CkF+H+
  KN541665.1_FGP003 53 PGEPDCTYYVKFGSCRFGMKCKFNHP 78
                       5789*********************8 PP
2zf-CCCH34.73.1e-11257281226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++++C++++rtG Cky  +CkF+H+
  KN541665.1_FGP003 257 GEKECPYYMRTGSCKYATNCKFHHP 281
                        7899********************9 PP
3zf-CCCH19.91.3e-06404430127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f ++G+Ck+  +Ck++H++
  KN541665.1_FGP003 404 PGQPECQHFVKSGFCKFRMKCKYHHPR 430
                        5789*********************96 PP
4zf-CCCH23.87.7e-08449474227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++ r+G Ck+G+ C ++H++
  KN541665.1_FGP003 449 DQPVCTYYGRYGVCKFGPACAYNHPF 474
                        6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00135279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2585280IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-65478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-55780IPR000571Zinc finger, CCCH-type
SMARTSM003562.4208234IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.502214235IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793255283IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-8257281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4261280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676403431IPR000571Zinc finger, CCCH-type
SMARTSM003560.028403430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732447475IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081447474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5448475IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5449474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MADADARAPP KSDPGATPID EVSGGEKLPG EVAAAVGVEG AAADSRPRFP RRPGEPDCTY  60
YVKFGSCRFG MKCKFNHPAR KKKSRVKGSN GGSGSGGSNS SSNKASSPDD EQQAPKEEYG  120
SYVPDISPEV DSLGFADKGS ASNLENFKKY SYEIIDVKKG RVEPKELKVL KVAKEKRKEF  180
ISEGSSQEEC KTFSSLKIRP KCSVDFINQR FRGKYYSTPG GCKFGKACKY LHRDGKEGKT  240
DAEKVDLNFL GLPLRPGEKE CPYYMRTGSC KYATNCKFHH PDPSNVASKD PQLEHENGDA  300
PQQDVQGSSS QPNASIWPDQ RTVNEHHVPF IAPSPSYSAG MLPPQGMYPP PEWNGYHQVP  360
LNPYYPPGVP FQHFPAAPIN HPMYKAPEIP GHQQVPSEEY PERPGQPECQ HFVKSGFCKF  420
RMKCKYHHPR SPVPPAGALS PLGLPIKPDQ PVCTYYGRYG VCKFGPACAY NHPFNFSPVP  480
AAGPPLLPAQ YPTPGNYTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541665.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
GenBankAK1217740.0AK121774.1 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620300.10.0zinc finger CCCH domain-containing protein 65 isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLB8BP400.0B8BP40_ORYSI; Uncharacterized protein
STRINGOPUNC12G07750.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.16e-57C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]