PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541712.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 151aa    MW: 17264.7 Da    PI: 10.4626
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541712.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.41.7e-2912105185
                        EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+
  KN541712.1_FGP001  12 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFS 103
                        89*****************************999855667999************************************************9 PP

                        E- CS
                 B3  84 ld 85 
                        ++
  KN541712.1_FGP001 104 RS 105
                        65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-389126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-309121IPR015300DNA-binding pseudobarrel domain
CDDcd100177.34E-2710105No hitNo description
PROSITE profilePS5086313.42212121IPR003340B3 DNA binding domain
PfamPF023621.6E-2612106IPR003340B3 DNA binding domain
SMARTSM010191.1E-1912122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDAYRKKYIP LFEKAVTPSD VGKLNRLVVP KQQAERHFPF PLRRHSSDAA GKGVLLNFED  60
GEGKVWRFRY SYWNSSQSYV LTKGWSRFVR EKGLRPGDTV AFSRSAAAWG TEKHLLIDCK  120
KMERNNLATV DDDARVVVKL FGVDIAGDKT R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-491112713122DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541712.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029130.0AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878463.11e-100putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS71e-101Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0E0BWW53e-99A0A0E0BWW5_9ORYZ; Uncharacterized protein
STRINGOMERI01G02450.11e-100(Oryza meridionalis)
STRINGOS01T0140700-001e-100(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-53related to ABI3/VP1 1