PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541742.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 283aa    MW: 30361.3 Da    PI: 7.0067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541742.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-15133181355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++h+  Er+RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  KN541742.1_FGP001 133 QTHSLTERKRRCKINENLKTLQQLVPGC----DKSNNQASTLDKTIRYMKSLQ 181
                        79*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17128190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17130188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-14133185No hitNo description
PfamPF000103.3E-13133181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEMTSCYNDV DAGDMFAAAD YYSAGDEGDL FDMVWPGRRR RREEDNTSGC LPLSPPPPEL  60
AVDDQLPAGG DGGGGGGGGG EPVAVAEDDD SGKRWTEDQV PTDEGICVMG TRSESSKERR  120
KITRARRSSR YSQTHSLTER KRRCKINENL KTLQQLVPGC DKSNNQASTL DKTIRYMKSL  180
QQHVQAMSVG CSMKAAAAGV SYHPFLQPPP YLRPAIAARG AAPAGMVPRP LPSSMVPFAP  240
VLPMVVHHPA PLMMMPAAPA PLMTYPGSGV AGSSNITAER NKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541742.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-143CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BMU51e-149B8BMU5_ORYSI; Uncharacterized protein
STRINGOGLUM12G19500.11e-134(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.19e-18phytochrome interacting factor 3-like 5