PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541748.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 228aa    MW: 24514.3 Da    PI: 4.1896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541748.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.4e-101441128
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                       +g+WT+eEd +lv +++++G+g+W++++
  KN541748.1_FGP001 14 KGPWTPEEDIILVSYIQEHGPGNWRSVP 41
                       79***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-13548IPR009057Homeodomain-like
SuperFamilySSF466895.67E-9850IPR009057Homeodomain-like
PROSITE profilePS5129410.008962IPR017930Myb domain
PfamPF002491.5E-81441IPR001005SANT/Myb domain
CDDcd001673.25E-61640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRPPCCDKE GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PINTAASNRH PIFADATFPS  60
AAGSHTVSSN SDVNQMAAIA RRSPFADCPS SSYASSMDNI SKLLDGFMKT NSPSPPPPPL  120
QHYDGGYYDD VKPAVDVGGN PLLSSFDCMS GADLDCCFDV HQQQPASFME YGGYGGSYGD  180
ESKQQLMNQA APPPLSSIEK WLFDEAAAEQ VADLMDLSDG CCSVPMMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541748.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235250.0AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2415490.0AK241549.1 Oryza sativa Japonica Group cDNA, clone: J065176M15, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616542.11e-105myb-related protein 306
TrEMBLA0A0E0R3M51e-121A0A0E0R3M5_ORYRU; Uncharacterized protein
STRINGORUFI11G01560.11e-122(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2657422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-26myb domain protein 60