PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541782.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 591aa    MW: 67031.6 Da    PI: 6.8584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541782.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-066186126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ++ + C+++ ++G Ck+G  C ++H+
  KN541782.1_FGP001 61 PGVPDCSYYVEFGSCKFGMGCLYNHP 86
                       5789*********************8 PP
2zf-CCCH24.35.3e-08106128527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         C +++r+G CkyG +C+F+H+p
  KN541782.1_FGP001 106 DCLHYLRFGRCKYGMNCRFNHPP 128
                        699******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0926087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1456088IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882101129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.88E-5103131IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001107128IPR000571Zinc finger, CCCH-type
SuperFamilySSF483716.04E-32305488IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.40.1805.8E-31308467IPR016021MIF4G-like domain
PfamPF028541.9E-23313469IPR003890MIF4G-like, type 3
SMARTSM005431.5E-9313541IPR003890MIF4G-like, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MATTTSSSAS DPAAISPTPS QQHASSTVKT LDDRRPTGTS SSAGETEPKA AVEPQEYPRR  60
PGVPDCSYYV EFGSCKFGMG CLYNHPAKHA GGCDKLEHPQ RPGEHDCLHY LRFGRCKYGM  120
NCRFNHPPDR LPQQQVYFPW KACHCHHSEG KSEAEHVKLN FLGLPLRPRG NSCFQPAEQI  180
RYTRDQLLKL RETVDVPKDI MKLIQDINVE LRAEDESRAP NETNYETDSH DWHSRSLQTP  240
VVAEEEKSQD DTREAKEPYA LGWKQKQFNK QDQKSFQSDS KAQHQAGPTL ALHKAEDPWS  300
IQRSTVPEKY KVLKTVKGIL NLFTPEKFDI LKDQLIEAGI TRTDILKDVI DLILEKAVAE  360
PTLCPMYAQF CSYLNENLTA FPPKDTHCEQ ITFKQALSDK CRQAFEIARN VRADIYKLTG  420
REQEMERRDK ERLVKHQILG KIRLIRDLLK QKMVPDKIVH HIAQAVTDCE NFHFEPLENV  480
DLLNIIFDGV LDSVLPGTEA NKVVNAIIGI EKCSIASNDA GIIHKDVNRR NEEAKLQKSS  540
NDIPNNLIDP QKNYVVSAFG HPIENEKQTN SETSGNRVCH CGHLQLSDFS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iul_A4e-1431246822182Eukaryotic translation initiation factor 4 gamma 2
4iul_B4e-1431246822182Eukaryotic translation initiation factor 4 gamma 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541782.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194530.0AK119453.1 Oryza sativa Japonica Group cDNA clone:001-133-D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882267.10.0zinc finger CCCH domain-containing protein 42 isoform X2
SwissprotQ5Z5Q31e-167C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLB9FTI70.0B9FTI7_ORYSJ; Uncharacterized protein
STRINGORUFI06G17650.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.15e-19zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]