PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN541795.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 231aa MW: 25374.4 Da PI: 6.0185

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN541795.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	30	78	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 rg+WT eEd ll ++++ +G g+W++ ar+ gRt++++k++w++ KN541795.1_FGP002 30 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSAqhlPGRTDNEIKNYWRT 78 89************************99999999*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.287	25	84	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-19	26	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.28E-14	27	83	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-11	29	82	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-12	30	78	IPR001005	SANT/Myb domain
CDD	cd00167	5.05E-13	32	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSQRRVAGPM GVMSKQQQEA MAEEMMELRR GPWTLEEDNL LMNYIACHGE GRWNLLARCS 60 AQHLPGRTDN EIKNYWRTRV QKQARQLKVD ANSTVFRDAV RCYWMPRLLE KMAGAASDPT 120 PPPPPPLHHH AAMATASSSP FDFDTHLQQA EAATACVVPN NVYHHHIDPS PSTSTSAGST 180 AFQPVPCFSE LRWDQQMQSS GELDDGAGGV FVDSASALGS LSLDGLDLAN G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269\|PubMed:19529828}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN541795.1_FGP002

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19529828}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002860	0.0	AP002860.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0409B08.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633690.1	1e-140	transcription factor MYB62 isoform X2
Swissprot	Q9C9G7	1e-35	MYB62_ARATH; Transcription factor MYB62
TrEMBL	A0A0D3EJ64	1e-138	A0A0D3EJ64_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0FFP8	1e-138	A0A0E0FFP8_ORYNI; Uncharacterized protein
TrEMBL	I1NJX5	1e-138	I1NJX5_ORYGL; Uncharacterized protein
STRING	ONIVA01G01990.1	1e-139	(Oryza nivara)
STRING	ORGLA01G0016500.1	1e-139	(Oryza glaberrima)
STRING	OBART01G01830.1	1e-139	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	6e-34	myb domain protein 62

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]