PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541858.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 940aa    MW: 104542 Da    PI: 6.7527
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541858.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.5e-2331132199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  KN541858.1_FGP001  31 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV-- 118
                        99*****************************954.4444.49************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  KN541858.1_FGP001 119 RDEKQQLLLGIRRA 132
                        5688889****997 PP
2Auxin_resp118.36.1e-39157240183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  KN541858.1_FGP001 157 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 240
                        79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-4320160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-4223146IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-1930122No hitNo description
SMARTSM010191.6E-2231133IPR003340B3 DNA binding domain
PfamPF023629.1E-2131132IPR003340B3 DNA binding domain
PROSITE profilePS5086311.80131133IPR003340B3 DNA binding domain
PfamPF065071.2E-33157240IPR010525Auxin response factor
PfamPF023091.4E-9773860IPR033389AUX/IAA domain
PROSITE profilePS5174526.938775859IPR000270PB1 domain
SuperFamilySSF542773.43E-7787854No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MTLQPVTSYG KEALQLSELA LKQARPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL  60
DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD  120
EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF  180
VIPFAKYQKA VYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ  240
VGWDESAAGE RRNRVSIWEI EPVAAPFFIC PPPFFDDESS EMENLLKRAM PWLGEEICIK  300
DPQTQNTIMP GLSLVQWMNM NMQQSSSFAN TAMQSEYLRS LSNPNMQNLG AADLSRQLCL  360
QNQLLQQNNI QFNTPKLSQQ MQPVNELAKA GIPLNQLGVS TKPQEQIHDA SNLQRQQPSM  420
NHMLPLSQAQ TSLGQAQQKL LLDMQQQLSN SQTLSQQQMM PQQSTKVPSQ NTPLPLPVQQ  480
EPQQKLLQKQ AMLADTSEAA VPPTTSVNVI STTGSPLMTT GATHSVLTEE IPSCSTSPST  540
ANGNHLLQPI LGRNKHCSMI NTEKVPQSAA PMSVPSSLEA VTAIPRMIKD SPKLNHNVKQ  600
SVVASKLANA GTGSQNYVNN PPPTDYLETA SSATSVWLSQ NDGLLHQNFP LSNFNQPQMF  660
KDAPPDAEIH AANTSNNALF GINGDGPLGF PIGLGTDDFL SNGIDAAKYE NHISTEIDNS  720
YRIPKDAQQE ISSSMVSQSF GASDMAFNSI DSTINDGGFL NRSSWPPAAP LKRMRTFTKV  780
YKRGAVGRSI DMSQFSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH EDDILLLGDD  840
PWEEFVGCVK CIRILSPQEV QQMSLEGCDL GNNIPPNQAC SSSDGGNAWR ARCDQNSEAI  900
LKISMMKSKV EDVRSVFFES YAFAFCKCYA WLFFRYWNTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1241261128388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541858.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643493.10.0auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0E0LFB80.0A0A0E0LFB8_ORYPU; Auxin response factor
STRINGOMERI06G24960.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-151auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]