PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541942.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 479aa    MW: 52332.3 Da    PI: 7.2591
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541942.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.27.7e-242874132128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          GfrF+P+ e+l+++yL++ ++gk+++ +e  i ++d+y +eP+dL  k     +   e+   +fF++ ++++ +++rk+r++ +g+W  +
  KN541942.1_FGP001 287 SLGFRFNPSAEDLITFYLRRLIAGKPTKDTEKfICRADVYCSEPSDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTRKERTAGAGTWVRQ 376
                        57************************6654544**************843454222..255588**************************88 PP

                NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + kev++k g +vg  + + f     ++g+ tdW+m+e + 
  KN541942.1_FGP001 377 NS-KEVKNKAGVKVGETQNFRFK----KDGSYTDWLMEEHHC 413
                        65.999999*************7....78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534741.93E-3415279IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18208.0E-5044279IPR029058Alpha/Beta hydrolase fold
PfamPF078593.9E-35100282IPR013094Alpha/beta hydrolase fold-3
SuperFamilySSF1019412.75E-26281433IPR003441NAC domain
PROSITE profilePS5100526.312286433IPR003441NAC domain
PfamPF023651.5E-13289412IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAATKERQEA ANPTTTTRTL VESVTNWIHV YSDGSVDRLG PPEAAAFMVL VPPYDDPRDG  60
VTVHDVATDH GVDVRLYLTV VKEESKTTTT TTTTRRRPVL VHFHGGGFCL SHAAWSLYHR  120
FYARLAVELD VAGIVSVVLP LAPEHRLPAA IDAGHAALLW LRDVASGTSD TIAHPAVEHL  180
RGAADFSRVF LIGDSAGGVL VHNVAARAGE AGAERLDPIR IAGGVLLHPG FILPEKSPSE  240
LENPPTPFMT QETVDKFVML ALPVGTTSRD HPYTSPAAAQ YVEKMLSLGF RFNPSAEDLI  300
TFYLRRLIAG KPTKDTEKFI CRADVYCSEP SDLAGKFAPV PRCEKGGRFF FTSCKRHKGS  360
STRKERTAGA GTWVRQNSKE VKNKAGVKVG ETQNFRFKKD GSYTDWLMEE HHCCRQQAVA  420
SDEEPVICRM YVSPRAPPDS AARQESAALV QQQPAPQVSE PPCDKKKRDD VAEEAPAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o7r_A1e-276129153267CXE carboxylesterase
2o7v_A1e-276129153267CXE carboxylesterase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541942.1_FGP001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005040.0BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618312.11e-170probable carboxylesterase 17
TrEMBLG2XLE40.0G2XLE4_ORYGL; Hypothetical_protein
STRINGOGLUM11G02060.10.0(Oryza glumipatula)
STRINGOMERI12G01020.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-14NAC domain containing protein 90