PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN541998.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 379aa    MW: 41995.4 Da    PI: 6.4221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN541998.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10208256355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  KN541998.1_FGP001 208 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 256
                        58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16203272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-11203260No hitNo description
Gene3DG3DSA:4.10.280.102.3E-16205273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-8208256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVKLVVGSCR GSCDLAVRFG LFLKALKHIS SCYSRTFPGW EQGKIGVSEQ LEMYSGQQSD  60
QCPGPNSGKE FLEVNWDSVA LHQKMGYNSG AFGFQAYPMV LEDREGLYRS PNGTFCQNIQ  120
LSDDHSSGAK RRKGIDDHIA LLNPSASSRI QNVGDQQTEV SSQQERISME EDNQKSCSKM  180
QNKEDSSDGD GTKEDYVHVR AKRGQATNSH SLAERLRRKK ISERMKLLQD LVPGCSKITG  240
KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PELSFDIEQI LSKQMMLSQD RHLAFYGVDP  300
GSSALVAHFN QGIMQPEMLC NVSNPADVLQ GTTIQDISTV NQIPAMWEGL QNIPHLNYNP  360
GGAMAEGSTN NSGSMKIEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN541998.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632666.10.0transcription factor bHLH74
RefseqXP_015632667.10.0transcription factor bHLH74
RefseqXP_025879964.10.0transcription factor bHLH74
RefseqXP_025879965.10.0transcription factor bHLH74
TrEMBLA0A0E0D6290.0A0A0E0D629_9ORYZ; Uncharacterized protein
STRINGOGLUM03G32460.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-54bHLH family protein