PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542079.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 136aa    MW: 14567.9 Da    PI: 7.9439
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542079.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY40.74.7e-13741051647
                        TT-SS-EEEEEE-STT---EEEEEE-SSSTTE CS
               WRKY  16 kgsefprsYYrCtsagCpvkkkversaedpkv 47 
                        k  + prsYYrCt+++Cpvkk+vers +d  v
  KN542079.1_FGP001  74 KRPRQPRSYYRCTTQKCPVKKRVERSYQDAAV 105
                        556789*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007740.003471108IPR003657WRKY domain
SuperFamilySSF1182901.2E-974105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-1074105IPR003657WRKY domain
PfamPF031067.5E-874102IPR003657WRKY domain
PROSITE profilePS5081111.24479102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTPNSMSVSS TSSEACGVGG GGAGGDEESA GKCKKEEGDG GDDDGKEGSA TTKGDGDGED  60
KNKKGGKGKG KGEKRPRQPR SYYRCTTQKC PVKKRVERSY QDAAVHFMAQ DYGLLQDMFI  120
PSPFLHNDYP NNNNHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542079.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209868e-85AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149618e-85AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126138e-85CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650015.15e-23WRKY transcription factor WRKY51
TrEMBLA0A1D6MCY11e-21A0A1D6MCY1_MAIZE; Putative WRKY DNA-binding domain superfamily protein
TrEMBLA0A3L6EFF81e-21A0A3L6EFF8_MAIZE; Putative WRKY transcription factor 71
STRINGOMERI03G29260.12e-24(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46350.12e-10WRKY DNA-binding protein 8