PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542159.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 78aa    MW: 8885.85 Da    PI: 6.2438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542159.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.6e-113371444
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                       +T+eE++l  + +++ G++ W++Ia +++ gRt+k++  +w
  KN542159.1_FGP001 33 FTEEEEDLVFRMHRLVGNR-WELIAGRIP-GRTAKEVEMFW 71
                       8******************.*********.******98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-72977IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-133371IPR009057Homeodomain-like
CDDcd001674.25E-93371No hitNo description
PROSITE profilePS500907.0733371IPR017877Myb-like domain
SuperFamilySSF466892.11E-93372IPR009057Homeodomain-like
PfamPF002493.6E-103371IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1900033Biological Processnegative regulation of trichome patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MDSSSGSQGK NSKTSDGCET KEVNSTAQNF IHFTEEEEDL VFRMHRLVGN RWELIAGRIP  60
GRTAKEVEMF WAVKHQNT
Functional Description ? help Back to Top
Source Description
UniProtMYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542159.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8334471e-120CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644378.15e-45PREDICTED: MYB-like transcription factor ETC3
SwissprotB3H4X87e-21TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBLA0A0D3ERB61e-50A0A0D3ERB6_9ORYZ; Uncharacterized protein
TrEMBLA2WSP81e-50A2WSP8_ORYSI; Uncharacterized protein
TrEMBLA2ZVH21e-50A2ZVH2_ORYSJ; Uncharacterized protein
STRINGOBART01G22980.12e-51(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30424.13e-23MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang M,Hu Y,Liu X,Li Y,Hou X
    Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development.
    Front Plant Sci, 2015. 6: p. 955
    [PMID:26579186]