PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542170.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 314aa    MW: 33914.4 Da    PI: 4.6183
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542170.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.95.6e-2181501128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgk..rknr.atksgyW 83 
                        l pG+ F+P+d+ l++ +L++k+++ ++e  + i+++d+y+++P +L         ++++ + wyfF++ + +++++   r++r    +++W
  KN542170.1_FGP003   8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHADVYSADPAELVGehrpapGTHGSGSVWYFFCSPRYTSKRKAsgRRQRaGGGESVW 98 
                        579************************999.89**************733567665556778******98766664441144441455889* PP

                NAM  84 katgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                        k+ g +k+v+ ++g+ vg  + + +        +g+a++ ++  W+m ey l
  KN542170.1_FGP003  99 KSEGGKKAVIGADGRRVGYLQKFSYGvyessssSGSARSFTRLGWCMTEYGL 150
                        *******************9999996667777668888889*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-336169IPR003441NAC domain
PROSITE profilePS5100530.1658169IPR003441NAC domain
PfamPF023654.6E-1310149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHADVYSADP AELVGEHRPA  60
PGTHGSGSVW YFFCSPRYTS KRKASGRRQR AGGGESVWKS EGGKKAVIGA DGRRVGYLQK  120
FSYGVYESSS SSGSARSFTR LGWCMTEYGL DDDATDGADK QVLCKVYRSP RAVCAEARTA  180
AAKCSGSKRK ADDGVDHPEA QPPSARPRQE EAGSEHDEQS SELLPELDLD ALLSAPMDEN  240
LESTFSKAAT EQYMRYLLND EPLPWAPTTE LVDGGGGGGD EFIQTANGPC MDGEVFARLA  300
AGETLDDILG STSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-14516814164NO APICAL MERISTEM PROTEIN
1ut4_B6e-14516814164NO APICAL MERISTEM PROTEIN
1ut7_A6e-14516814164NO APICAL MERISTEM PROTEIN
1ut7_B6e-14516814164NO APICAL MERISTEM PROTEIN
3swm_A5e-14516817167NAC domain-containing protein 19
3swm_B5e-14516817167NAC domain-containing protein 19
3swm_C5e-14516817167NAC domain-containing protein 19
3swm_D5e-14516817167NAC domain-containing protein 19
3swp_A5e-14516817167NAC domain-containing protein 19
3swp_B5e-14516817167NAC domain-containing protein 19
3swp_C5e-14516817167NAC domain-containing protein 19
3swp_D5e-14516817167NAC domain-containing protein 19
4dul_A6e-14516814164NAC domain-containing protein 19
4dul_B6e-14516814164NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542170.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.10.0NAC transcription factor NAM-2
TrEMBLI1PH800.0I1PH80_ORYGL; Uncharacterized protein
STRINGORGLA03G0372600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-16NAC family protein