PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542264.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 361aa    MW: 40587.2 Da    PI: 6.8543
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542264.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-091201571954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  KN542264.1_FGP001 120 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 157
                        665559******************************88 PP
2BELL94.11.3e-301541972
               BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                       Vd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  KN542264.1_FGP001  1 VDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 54
                       89**************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.2E-25150IPR006563POX domain
SMARTSM005744.3E-4152IPR006563POX domain
PROSITE profilePS5007112.35798161IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-28100170IPR009057Homeodomain-like
CDDcd000862.03E-12101162No hitNo description
SMARTSM003891.6E-9101165IPR001356Homeobox domain
SuperFamilySSF466891.24E-17102167IPR009057Homeodomain-like
PfamPF059204.9E-18118157IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
VDRKYKHYYH QMQIVVSSFD MVAGSGAAKP YTAVALQTIS KHFRCLKDAI NDQINVIRKK  60
LGEEESSSGK EGKLTRLRYI DQQLRQQRAF QQYGLLQQNA WRPQRGLPEN SVSILRAWLF  120
EHFLHPYPKD SEKLMLARQT GLTRSQISNW FINARVRLWK PMIEDMYKEE IGEADLDSNS  180
SSDNVPRSKD KIATSEDKED LKSSMSQTYQ PSQLGESKGN IGMMSLGGAP AGFHNEGNQD  240
DSFMNLMLKD QRPGEAEGSL LHDAVAHHSD ENARFMAYHL SGLGRYGNSN VSLTLGLQHP  300
DNRLSVQNTH QPGFAGAGEE IYNSTASLGV AAASSSDYES TNQIDQRQRF EPSPLMHDFV  360
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16107164158Homeobox protein Meis1
4xrs_B1e-16107164158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542264.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0699940.0AK069994.1 Oryza sativa Japonica Group cDNA clone:J023038C04, full insert sequence.
GenBankAY5249720.0AY524972.1 Oryza sativa (indica cultivar-group) benzothiadiazole-induced homeodomain protein 1 (BIHD1) mRNA, complete cds.
GenBankFJ9402090.0FJ940209.1 Oryza sativa Japonica Group clone KCS181A11 homeodomain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631000.10.0BEL1-like homeodomain protein 7
RefseqXP_025879417.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0D9ZBM80.0A0A0D9ZBM8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G29930.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.25e-89BEL1-like homeodomain 6