PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542275.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 908aa MW: 104486 Da PI: 7.1687

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542275.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.7	1.6e-17	155	237	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+++A ++GF ++ +++++ +k t C k g+++ + + +++r+++ +rt+C+ak++vk++ +g+we + +++eHnH+l+p KN542275.1_FGP001 155 RFYETHALKTGFVAKRGTNYRR------KKFTIECHKTGTSKLTPNP-QRKRKKNIIERTQCQAKVVVKLN-KGQWEYAAVRNEHNHPLCP 237 5*****************99......46789******9999.9******************.9**************97 PP
2	FAR1	57.2	5.6e-18	422	507	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY ++A +GF ++ +++k+ +k ++ C+k+gk + +k++ k+rr++ +++t+Cka++ vk++ +g+we t +++eHnH+l+ KN542275.1_FGP001 422 RFYYAHALLTGFVGKRGTNYKR------KKFHLECNKSGKMKLTKSSenPMKKRRSNLVEKTQCKARVIVKLD-KGEWEFTAVRHEHNHPLC 506 59****************99......4678****998887755789999**************.9**************9 PP FAR1 91 p 91 p KN542275.1_FGP001 507 P 507 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-15	155	237	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.6E-16	422	507	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.803	752	788	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0078	763	790	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MEDVLMHILP VDSEQASNND GQTVITPVEL IKKPVEKQVI TEGRLQLAGD GYQLLSSNGI 60 DKTAEQLYVD QLGRQTNSMD QSLQHTDGQN QSHDNMESNE VSSDDRNSDG DSDRSLGNES 120 DKGLGAHYSP SLMELDNARP PELGMKFATL EDAQRFYETH ALKTGFVAKR GTNYRRKKFT 180 IECHKTGTSK LTPNPQRKRK KNIIERTQCQ AKVVVKLNKG QWEYAAVRNE HNHPLCPSYS 240 LRFSKRKRRR NPPSQKQLDV QRNSDQLTQA DNLEERLSQP LISADSNEVN NKRMPRHAEN 300 SIPTVEKEPV DKLQPAGDYQ EQSSNGIDKN AERPIVDKLG EQTNSIDHSL QHTEEHNRSH 360 DNVESSEAPS EDTSSESNSD SSSGDESDKE LGKYFYPSFD ELKNSRPPEP GMKFPSLQAA 420 QRFYYAHALL TGFVGKRGTN YKRKKFHLEC NKSGKMKLTK SSENPMKKRR SNLVEKTQCK 480 ARVIVKLDKG EWEFTAVRHE HNHPLCPSPL LARFIVDHKQ MSTGEKSFLR VLQQNRDTSM 540 EKAFAELMPH VRLRFCKRHV MSKAQEKLGD FMTARGNINA DLHNLVGNSL VETEFEEGWV 600 ELIERYNASE NQHLQLMWQT RKSWAPVYFR EDLYPFIDSV SSNEGINSLF KGNMLPKDTI 660 DKFIGQFKEI QENIAKVHEE DRFQSGADLK YISMQPIEQH AAHIYTREIF LKVQKELLHS 720 TAFNVQEIQI GTVYRLEKVF NYENPEFDRN YFEVLAEPGI NAFKCQCAKF TRDGIPCCHI 780 FRLFTQFGIN EIPEQYIMPR WTKKFREEQL KQNKEKLFDK HGIKDSENTL RYAMLMSKAA 840 EICRKICHDE AKCSIFMQEL DKIQEKLITE SRENAQNDNP CREQGALQQE HRGSSSNAEQ 900 EQQHTGGL

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MEDVLMHILP VDSEQASNND GQTVITPVEL IKKPVEKQVI TEGRLQLAGD GYQLLSSNGI  60
DKTAEQLYVD QLGRQTNSMD QSLQHTDGQN QSHDNMESNE VSSDDRNSDG DSDRSLGNES  120
DKGLGAHYSP SLMELDNARP PELGMKFATL EDAQRFYETH ALKTGFVAKR GTNYRRKKFT  180
IECHKTGTSK LTPNPQRKRK KNIIERTQCQ AKVVVKLNKG QWEYAAVRNE HNHPLCPSYS  240
LRFSKRKRRR NPPSQKQLDV QRNSDQLTQA DNLEERLSQP LISADSNEVN NKRMPRHAEN  300
SIPTVEKEPV DKLQPAGDYQ EQSSNGIDKN AERPIVDKLG EQTNSIDHSL QHTEEHNRSH  360
DNVESSEAPS EDTSSESNSD SSSGDESDKE LGKYFYPSFD ELKNSRPPEP GMKFPSLQAA  420
QRFYYAHALL TGFVGKRGTN YKRKKFHLEC NKSGKMKLTK SSENPMKKRR SNLVEKTQCK  480
ARVIVKLDKG EWEFTAVRHE HNHPLCPSPL LARFIVDHKQ MSTGEKSFLR VLQQNRDTSM  540
EKAFAELMPH VRLRFCKRHV MSKAQEKLGD FMTARGNINA DLHNLVGNSL VETEFEEGWV  600
ELIERYNASE NQHLQLMWQT RKSWAPVYFR EDLYPFIDSV SSNEGINSLF KGNMLPKDTI  660
DKFIGQFKEI QENIAKVHEE DRFQSGADLK YISMQPIEQH AAHIYTREIF LKVQKELLHS  720
TAFNVQEIQI GTVYRLEKVF NYENPEFDRN YFEVLAEPGI NAFKCQCAKF TRDGIPCCHI  780
FRLFTQFGIN EIPEQYIMPR WTKKFREEQL KQNKEKLFDK HGIKDSENTL RYAMLMSKAA  840
EICRKICHDE AKCSIFMQEL DKIQEKLITE SRENAQNDNP CREQGALQQE HRGSSSNAEQ  900
EQQHTGGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	200	RKRKK
2	244	249	KRKRRR
3	245	249	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542275.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064078	0.0	AK064078.1 Oryza sativa Japonica Group cDNA clone:002-100-A08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627510.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	B8AFM7	0.0	B8AFM7_ORYSI; Uncharacterized protein
STRING	OB02G21030.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-30	FAR1-related sequence 5