PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN542327.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 179aa    MW: 19275.9 Da    PI: 4.5616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN542327.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-091451138
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlk 38
                       +g+W++eEd +l+ +++q G+g +W + ++++g gR + 
  KN542327.1_FGP001 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIG-GRVGD 51
                       79*******************************.99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-7353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-11558IPR009057Homeodomain-like
PROSITE profilePS500908.177961IPR017877Myb-like domain
SMARTSM007170.0041363IPR001005SANT/Myb domain
PfamPF002495.5E-81453IPR001005SANT/Myb domain
CDDcd001679.10E-51648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGGRVG DDVDESIRKL  60
LFKLGGNPFA ASPAPPCIPP PPMYEEAPSF VPPLAHGVPL NEGGMQCSSV LPALELDESF  120
HFNHVKLDGL ECLFGMGDHQ NMRWNEVSPL VCPNNAVASS SQGMQQYCLV EEPADLGMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN542327.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628327.11e-80transcription factor RAX3
TrEMBLA0A0D3FPK86e-80A0A0D3FPK8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GUC16e-80A0A0E0GUC1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P1V36e-80A0A0E0P1V3_ORYRU; Uncharacterized protein
TrEMBLA2XMD46e-80A2XMD4_ORYSI; Uncharacterized protein
TrEMBLI1PFX46e-80I1PFX4_ORYGL; Uncharacterized protein
STRINGORUFI03G37090.11e-80(Oryza rufipogon)
STRINGONIVA03G37150.11e-80(Oryza nivara)
STRINGORGLA03G0327000.11e-80(Oryza glaberrima)
STRINGOBART03G35660.11e-80(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-26myb domain protein 84